Basically image acquisition is performed as you are used to do it within ZEN software. The file format for Shuttle & Find data is the common *.czi file format. Saved images can be loaded in ZEN via the menu File > Open.

After image acquisition the next step in the correlative workflow is to define/draw in ROIs/POIs in your image. Therefore you can use the Region tools on the S&F tab, see Regions, Find and Dimensions.