Alignment Controls Section
This section of the Coarse Z-Stack Alignment setup contains the main controls to align the z-planes of your stack manually.
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Parameter |
Description |
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Speed |
Selects the speed/ number of pixels by which the z-planes are shifted per click. |
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– |
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Shifts the z-planes by 1 pixel per click. |
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– |
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Shifts the z-planes by 10 pixels per click. |
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– |
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Shifts the z-planes by 100 pixels per click. |
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– |
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Shifts the z-planes by 1000 pixels per click. |
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Arrow Buttons |
Shifts the next and all following z-planes in the corresponding direction. |
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Visibility Weight slider |
Changes the color intensity of the current plane and the following z-planes in the Image View. In extreme slider positions, only the current z-plane or only the following z-planes are displayed. |
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Channels |
Only available for images with multiple channels. Selects the channel that is displayed in the Image View. The same shift is applied to all channels of the image. |
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Shift List |
Displays a list with all the shifts in x and y direction that you defined in the setup. |
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