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ZEISS Microscopy Knowledge Base

Feature Extractors

Diagram: Deep Neural Networks (convolution→fully connected) vs predefined features pipeline to segmented volume

Intellesis Deep Features

  • Entire image as input for pre-trained network.
  • Note: If you use the CPU for segmentation with Deep Feature sets, the results can be different on different machines because they are hardware (CPU) dependent.
  • Take the output from an intermediate layer of that network as feature vector, e.g. output from layer 3 was processed by preceding layers 1 and 2.
    • Deep Features 50: Using layer 2 with reduced feature dimension = 50
    • Deep Features 64: Using layer 1 with full feature dimension = 64
    • Deep Features 70: Using layer 3 with reduced feature dimension = 70
    • Deep Features 128: Using layer 2 with full feature dimension = 128
    • Deep Features 256: Using layer 3 with full feature dimension = 256
VGG 19 diagram showing stacked 3x3 conv layers with maxpool, depth labels and final FC1 FC2 size=1000 softmax
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