This extension offers following possibilities:

  • Easy exchange of images, from simple two-dimensional images, to more complex, multidimensional entities, like Z-stacks, time series and so on. The exchange can go both ways, from ZEN to ImageJ, as well as from ImageJ to ZEN.
  • Execute functions in ImageJ, without having to leave the ZEN environment.
  • Combine the two benefits, introduced above: sending a ZEN image to ImageJ, having it processed there, and then returning the resulting image back to ZEN in one single step.

Note that different versions and variants of ImageJ and Fiji exist. This document is based on the ImageJ/Fiji version 1.46. See notes for specifics of other versions and variants. For the sake of simplicity, Fiji is implied also, wherever ImageJ is mentioned in the following text.