The image processing functions Analyze to Image Batch labels images based on an existing image analysis setting and the parameters which you select in the Parameters section.

Parameter

Description

Setting

Displays image analysis settings in the drop-down list.

Image Folder

Selects the folder of the images.

Initialization

Initializes the output image.

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One channel

Creates a one channel output image.

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One channel and copy first

Creates a one channel output image and copies the content of the first channel.

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One channel per class

Creates an output image with one channel per region class.

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One channel per class and copy

Creates an output image with one channel per region class and copies the content of the original channels of each class.

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All referenced channels

Creates all channels referenced in the image analysis setting.

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All referenced channels and copy

Creates all channels referenced in the image analysis setting and copies the content of the original image.

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Copy all Channels and Label all

Creates an output image containing each channel of the input image and overlays each channel the masks of all classes defined in the image analysis setting.

Label Mode

Selects the mode of labels applied to the image.

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Region - Pixel Type Maximum

Labels the region with the maximum value of the pixel type.

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Region - Label Value

Labels the region with the value specified by the Label Value slider/ input field.

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Region - Region ID

Labels the region with the region ID.

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Region - Region ID Color

Labels the region with the region ID color.

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Region - Region Class ID

Labels the region with the region class ID.

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Region - Region Class Color

Labels the region with the region class color.

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Contour - Pixel Type Maximum

Draws a contour with the maximum value of the pixel type.

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Contour - Label Value

Draws a contour with the value specified by the Label Value slider/ input field.

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Contour - Region ID

Draws a contour with the color defined by the region ID.

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Contour - Region ID Color

Draws a contour with the color defined by the region ID color.

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Contour - Region Class ID

Draws a contour with the color defined by the region class ID.

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Contour - Region Class Color

Draws a contour with the color defined by the region class color.

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Contour2 - Pixel Type Maximum

Draws a double contour with the value defined by the maximum value of the pixel type.

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Contour2 - Label Value

Draws a double contour with the value specified by the Label Value slider/ input field.

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Contour2 - Region ID

Draws a double contour with the color defined by the region ID.

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Contour2 - Region ID Color

Draws a double contour with the color defined by the region ID color.

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Contour2 - Region Class ID

Draws a double contour with the color defined by the region class ID.

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Contour2 - Region Class Color

Draws a double contour with the color defined by the region class color.

Pixel Type

Selects the pixel type for the output image.

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8 Bit B/W

Creates an 8 bit black and white output image.

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16 Bit B/W

Creates a 16 bit black and white output image.

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24 Bit RGB

Creates a 24 bit colored output image.

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48 Bit RGB

Creates a 48 bit colored output image.

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32 Bit B/W Float

Creates a 32 bit black and white image.

Label Value

Selects the label value.

Format

Selects the format of the output image. You can save your image(s) as:

  • czi
  • png
  • czi and png