ZEISS Microscopy Knowledge Base
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ZEISS Microscopy Knowledge Base

Tool Bars

The tool bars are arranged to the left and right of the image area and underneath it. You can use the tools to control and adjust the display of the 3D volumes in the image area.

Tool Bar (Left)

Parameter

Description

Top thumb wheel vertical control with stacked horizontal bars and small magnifier icon
Top Thumb Wheel

Zooms in or out of the 3D image.

Select icon: white arrow cursor on dark square background
Select

Enables you to select end points of measurement tools that have been drawn into the 3D image (Measurement tab). You can then edit the position of the end points.

Dark blue square icon with white crosshair and four small filled circles at the crosshair ends
Rotate

Enables you to rotate the 3D image in any way you wish within the space. This is the default mode when you switch to 3D view for the first time.

Rotate icon: diagonal pointer cursor on dark square background
Zoom

Enables you to increase or reduce the zoom factor of the image area.

Move icon: white hand cursor on dark square background
Move

Enables you to move the 3D image.

Fly icon: white paper airplane on dark square background
Fly

Enables the flight mode. This mode allows you to virtually fly through the 3D image. Use the keys from the list below to control your flight.

Vertical gradient bar with horizontal segments and a small circular crosshair icon near the top
Bottom Thumb Wheel

Rotates the 3D image around the horizontal (X) axis.

Flight Mode Key Layout/Controls

Key

Function

W

Forward

S

Backward

A

Left

D

Right

Space

Up

C

Down

E

Rotate (clockwise)

Q

Rotate (counter-clockwise)

X

Precision Mode, enables slower movement

Tool Bar (Right)

Parameter

Description

Toggle X/Y clipping plane icon (blue)
Toggle X/Y Clipping Plane (Blue)

Toggles the visibility of the X/Y clipping plane.

Toggle X/Z clipping plane icon (green)
Toggle X/Z Clipping Plane (Green)

Toggles the visibility of the X/Z clipping plane.

Toggle Y/Z clipping plane icon (red)
Toggle Y/Z Clipping Plane (Red)

Toggles the visibility of the Y/Z clipping plane.

Snap icon (camera)
Snap

Creates a 2D image of the current view. The image is a 24 bit color image. All annotations are burned in automatically.

Add icon (camera with plus)
Add

Adds the current view to a position list as a new position.
With the help of position lists you can have your view calculated as a series of individual images. This series can then be exported as a movie, for example.

Dark rounded square icon with blue left edge and small white rectangle in the top-right corner
Play

Only active if a position list containing at least two saved positions exists.
Plays back a preview of the series that is calculated. To stop the preview, click on the button again.

Tool Bar (Bottom)

Control element

Description

Segmented light gray horizontal control bar on dark blue background with small circular rotation icon at right
Left Thumb Wheel

Rotates the 3D volume around the vertical (Y) axis.

White house icon centered in a dark rounded square button
Home View

Switches back to the start view from any view.
A top view of the 3D volume is displayed. Lateral movements and the zoom factor are adjusted so that the 3D volume can be seen at the center of the image area.

White rectangular grid icon in a dark rounded square button
Show Measurements

Shows or hides measurements.
If measurements are drawn in, a table of the measurements appears at the right side of the image area.

White overlapping stacked-rectangles icon in a dark rounded square button
Show Bounding Box

Shows or hides a bounding box around the 3D volume.

White L-shaped corner line icon in a dark rounded square button
Show Coordinate Axes

Toggles the visibility of the coordinate axes.

  • X axis = red
  • Y axis = green
  • Z axis = blue

White ruler icon on dark blue rounded square
Show Scaling

Toggles the visibility of the scaling on each axis.

Light gray cube icon on dark blue rounded square
Show Objects

Only available if you have licensed the 3D Image Analysis functionality.
Toggles the visibility of the analysis objects in the 3D volume.

Dark blue square icon with white curved circular arrow and small dots along its arc
Spin Mode

Enables the spin mode. This allows to set the 3D volume in continuous motion. For a short description on how to use the spin mode, see Animating the 3D Volume.

Light gray cube icon on dark blue rounded square
Glass Visualization

Only available if you have licensed the 3D Image Analysis functionality.
Switches to glass visualization of the analysis objects in the 3D volume.

Light gray cube icon on dark blue rounded square
Opaque Visualization

Only available if you have licensed the 3D Image Analysis functionality.
Switches to opaque visualization of the analysis objects in the 3D volume.

Blue hexagon outline with small white cube icon on dark blue rounded square
Send to arivis Pro

Only active, if arivis Pro is installed and licensed on the system.
Starts arivis Pro and imports the image. The image will be displayed with almost identical rendering settings as in the 3D view of ZEN.
Note: Not all render methods produce absolutely identical settings between the two applications. This is due to additional functionalities available for arivis Pro.

Horizontal rounded gray bar with vertical gradient stripes on dark background and a small white line icon at top-left
Right Thumb Wheel

Rotates the 3D volume around the (Z) axis perpendicular to the screen plane.

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