Here you will find how-to guides providing an introduction to the CAT module and workflow, starting from general preparations to the acquisition on the LM (light microscope). After the image acquisition we will focus on the image alignment and correlation. As the SEM acquisition is done with Atlas, refer to their documentation for further information about the SEM workflow.

Note that we will not explain how to set up an experiment in detail as this step is beyond the scope of this guide which is focused mainly on the CAT workflow on the LM. Instead read Sample Preparation, where we describe the most important pre-requisites for a CAT experiment. We will not take a look at the further processing of the resulting images as well.