Image Type Send/Retrieve Conventions

.tif, .jpg, .bmp, .png, .gif

Original

.ome.tif

Original

2D image B/W .czi

32-bit (RGB)

Convert the image in ImageJ to the required pixel type using Image > Type command

2D image 24/48 bit color .czi

32-bit (RGB)

2D image 36/42 bit color .czi

-

Convert the CZI image to 24/48 bits before sending it or using it in a method

Multi-channel x Z-Stack x T-series

MD image

If necessary, reassign the dimensions using Image > Hyperstacks for instance. Channel colors may be different from those set in ZEN

Tiled images

-

Only the first tile gets loaded.

12bit B/W images

Error in ImageJ

Workaround: convert the pixel type of the image to 16 bits in ZEN

.tif, .jpg, .bmp, .png, .gif

Original

.ome.tif

Original

2-D images, B/W and RGB

B/W, RGB TIF

Multi-channel x Z-Stack x T-series

MD image

Hint: select RGB in Quick Color Setup to get the same colors for channels as in ImageJ

Tiled images

-

Only the first tile gets loaded.