If the pipeline is used in a batch analysis, the options set in the pipeline remain. Therefore, if a CSV file is the required output in a batch, this should be defined in the pipeline operation, not the Batch Analysis window.

Using CSV export in batch analysis also allows the batch to concatenate analysis results from multiple image sets. To enable this option, start by opening the Batch Analysis window, and after clicking the Next button select the option to "Combine exported CSV files".

Finish by setting up the other export options (output folder and nomenclature) and click Run to start the analysis.