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ZEISS Microscopy Knowledge Base

Changing the Result Storage options

To simplify pipeline creation, Result Storage is automatically added in the Collapsed view. In most cases, no change is needed and the modified images are used for segmentation but discarded when the pipeline completes. If the user preferes to keep the modified images permanently, the parameters can be changed by expanding the operation by clicking the Expand operation arrow in the title bar.

Result Storages: Blob Finder entry with green square and Channel: Channel #2

You can then change both the Voxel storage target and the Segments storage target.

Result Storages: Voxels: Temporary Document (Edit), Channels: Automatic/Manual toggle, Segments: Source Image Set

Voxels Storage

To change the voxels storage, click the Edit... button. This opens a new window where users can select from any of the available options.

Result Storages dialog titled "Specify how to store the voxel operation result." Temporary Document selected; Image Set Name "Analysis"; File Name shown; OK and Cancel buttons

  • Temporary Document - Processed images are stored in the analysis documents folder until the pipeline is completed and then discarded.
  • New Document - Processed images are stored in the analysis documents folder until the Result Storage operation is run and then saved into a new SIS file as defined by the user below.
  • New Image Set - Processed images are stored in the analysis documents folder until the Result Storage operation is run and then saved into a new image set in the current SIS file as defined by the user below.
  • New Channel(s) - Processed images are stored in the analysis documents folder until the Result Storage operation is run and then saved as new channels within the current image set.
  • Replace Original - Processed images are stored in the analysis documents folder until the Result Storage operation is run and then the original image data is overwritten by the processed images.

Segments Storage

To change the Segments storage, select from the available options in the droplist box directly in the Results Storage operation. The options are:

  • Source Image Set
  • This is the original unedited image data.
  • Result Image Set
  • This is the set generated during the Result Storage operation, whether that is a new document or image set.
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