As of arivis Vision4D 4.1.1, Cellpose-like segmentation is supported natively in the analysis pipeline. However, arivis does not use the native Cellpose model format and instead uses the ONNX standard. Therefore, if we want to use custom Cellpose models in arivis these first need to be converted to the right format. The script linked below automatically converts all Cellpose models, including custom models, for use with arivis.