Configure Data Aggregation dialog

Name

Shows the name of the column. To rename the column, uncheck the Auto name box.

Type

Defines the type of aggregation to be performed for the column.

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Object count

Counts the number of segments for a specific tag.

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Object feature

Selects one object feature for the selected tag to be aggregated (e.g. mean intensity).

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Calculation

Calculates the product or ration between two features (e.g. count of red nuclei/count of total nuclei).

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Metadata

Adds a column to the aggregation table that contains metadata information from the file (e.g. Image type or Image name).

Save and close

Saves the configuration and closes the dialog.

Cancel

Closes the dialog without saving the configuration.

Input

Selects the output tag whose objects are counted. Available output tags are defined by the pipeline operations.

Gradient

Selects the color gradient used to visualize the aggregated values in the heatmap.

Range

Defines the value range shown in the legend in the Data Aggregation dialog. When Fixed is selected, enter the minimum and maximum values manually.

Input

Selects the output tag whose object feature is aggregated. Available output tags are defined by the pipeline operations.

Feature

Opens the Select Feature dialog, where you can select the object feature to aggregate.

Method

Selects how the feature values are aggregated, for example by calculating their Mean, Minimum, Maximum, or Sum.

Gradient

Selects the color gradient used to visualize the aggregated values in the heatmap.

Range

Defines the value range shown in the legend in the Data Aggregation dialog. When Fixed is selected, enter the minimum and maximum values manually.

Method

Selects the calculation to perform using the values selected for A and B: Ratio divides A by B, while Product multiplies A by B.

Gradient

Selects the color gradient used to visualize the calculated values in the heatmap.

Range

Defines the value range shown in the legend in the Data Aggregation dialog. When Fixed is selected, enter the minimum and maximum values manually.

Value

Selects the metadata entry to add to the aggregation table.