New & Noteworthy

  • New Multi Run for the Analysis Panel: run the pipeline for multiple wells or fields of a well plate document
  • Retain selected tags when switching between wells or image sets
  • Accurately detecting cells and nuclei of varying sizes with the new Cellpose-SAM model
  • More intuitive rotation in 4D Viewer using the trackball rotation mode

High Content Analysis

  • new: run an analysis pipeline for selected well or fields with the new Multi Run mode
  • new: interactively select wells and fields for the analysis multi run with a new well picker
  • new: show hierarchical state and progress while running a pipeline over multiple fields and wells
  • new: explore the results of already finished wells while the pipeline for other wells is still running
  • new: stick to the currently selected tag selection while switching between different wells or fields
  • new: stick to the current channel visibility while switching between different wells or fields
  • new: distinguish different image types for a single well or field (e.g. fluorescence z-stack, bright-field or maximum intensity projection)

Analysis

  • new: Convert Traces to Segments operation
  • new: Cellpose-SAM (CPSAM) model is available in the Cellpose-based Segmenter operation
  • improved: Segment Morphology operation has additional parameters for some methods
  • improved: show a warning in the Batch Analysis if output files with the same name would be generated (and would overwrite each other)
  • improved: DL reconstruction speed up by better utilization of GPU resources
  • improved: better progress while downloading models from arivis Cloud AI Model Store
  • improved: error handling for the Export Surfaces operation
  • fixed: some minor bugs for the ML Trainer (Objects) and ML Trainer (Image)
  • fixed: issues with the objects in the DL Trainer if classes or training has been renamed before drawing
  • fixed: potential problem with continue training if multiple image sets are used in the DL Trainer
  • fixed: some rounding issues in the max distance field of the Compartments operation
  • fixed: potential crash with Magic Wand on CZI data
  • fixed: a problem with large planes in CZI data if used with arivis Cloud models in DL Segmenter
  • fixed: do not reset the object selection when switching viewer types (while showing objects from the Analysis pipeline)

General

  • new: do not reset object filter (e.g. selected tag) when switching between image sets
  • new: do not reset channel visibility when switching between image sets (with the same number of channels)
  • new: the Preview Features dialog allows you to activate and test early results for newly added features
  • new: the arivis Pro help content is provided by the ZEISS help viewer now
  • improved: help content layout

Objects

  • new: ability to represent feature values as colorful bars normalized to min / max of the Summary (if enabled)
  • improved: detection in the AI-assisted mode in the Draw Tool for data zoomed > 100%
  • improved: selection of (overlapping) objects in 2D
  • improved: help content for object store types and the context menu of the Objects dialog

4D Viewer

  • new: Quick Movie Export - export like you see it in the viewer
  • new: intuitive rotation of 3D data using the trackball rotation mode
  • new: dedicated Rotate tool
  • new: improved positioning of clipping planes with handles
  • improved: cursor feedback for axis-specific rotation with right mouse and XYZ key
  • improved: more anti-aliased selection line
  • fixed: prevent artifacts on volume boundaries with inverted opacity curve
  • fixed: prevent object render problems with some specific NVIDIA driver versions
  • fixed: avoid problems with missing permissions for the clipboard on copy / paste of opacity settings

Data Handling & Import

  • new: import image type for well plate data (e.g. fluorescence z-stack, bright-field or maximum intensity projection)
  • new: include image type (if available) in the default name for the imported image set
  • improved: import tiled LaVision FastTile Blaze data
  • improved: normalization of the color range for CZI float datasets
  • improved: support added for more compression types of HDF5 blocks (e.g. used by some IMS datasets)
  • fixed: potential wrong colors were imported from some Aperio-SVS data
  • fixed: wrong pixel size imported from some Aperio-SVS data
  • fixed: import of different image types as channels from Yokogawa
  • fixed: import of BigDataViewer with non-consecutive setups
  • fixed: some CZI appear blank if opened but not imported

Misc

  • new: Docker Desktop is now an optional download in the arivis Pro installer
  • new: includes a Docker Desktop license covering running arivis Cloud models in arivis Pro
  • removed: Extended Focus has been retired
  • several additional bug fixes and stability improvements