ZEISS Microscopy Knowledge Base
Help
ZEISS Microscopy Knowledge Base

User Interface Image Viewer

1

Left Toolbar
The toolbar on the left side offers tools related to the display of the image, see Left Toolbar.

2

Title Bar
Displays the file name of the currently opened image and allows you to go back to the Projects & Data view.

3

Image Area
Displays the currently opened image. You can navigate and zoom with your mouse, the controls in the right toolbar, or the controls in the Navigation Menu available on the left toolbar.

4

Right Toolbar
The toolbar on the right side offers tools related to zooming the image, to fit the view to your screen, and to toggle between 2D and polarization view (for images containing polarization channels), see Right Toolbar. Additionally, you have access to the Information panel.

Left Toolbar

Parameter

Description

Row of five dark square toolbar icons labeled Navigation, Polarization View, Channel Settings, Objects, Screenshot
Navigation

Opens the menu for navigation, see Navigation Menu.

Dark square icon with circular arrows symbol labeled Polarization View
Polarization View

Only active in case an image with polarization channels is opened.
Displays view options for an image with polarization channels, see Polarization View Options.

Dark square icon with line-chart symbol labeled Channel Settings
Channel Settings

Opens the menu for channel settings and split/single channel view, see Channel Settings.

Dark square icon with pencil symbol labeled Objects
Objects

Opens the menu to draw annotations into the image, see Objects Menu.

Dark square icon with camera-in-frame symbol labeled Screenshot
Screenshot

Displays options to create a screenshot, see Screenshot Options.

Gray square icon showing white gear and camera symbol
Settings

Opens a menu with general options for the objects drawn into the image, see Image Viewer Settings.

Dark square icon with white question mark inside a circle
Help

Displays information for some helpful shortcuts to interact with the viewer.

Right Toolbar

Parameter

Description

+

Zooms into the image area until a defined limit is reached.

Fit

Zooms the image into a state that the full image is shown in the image area.

-

Zooms out of the image area until a defined limit is reached.

2D

Only available for images with polarization channels.
Displays the image in the 2D view.

POL

Only available for images with polarization channels.
Opens the dedicated polarization view for the currently displayed image, see Polarization Viewer.

Parameter

Description

Navigator

Displays the image and the image part currently visible in the image area. This currently visible area of the image is illustrated by a white box. Moving the box with pressed left mouse button to a new position updates the image area. With the slider or input field, you can adapt the zoom level of the image. The two buttons above the image enable you to directly zoom to 100 percent (1:1) or to fit the view (Fit).

Dimensions

Enables you to move through the different dimensions of your image, e.g. to view the different z-planes, scenes, or time points.

Player

Enables you to automatically move through the image dimensions with a player functionality. You can move through the image in both directions, with different speed and also set a loop.

Channel Settings

Channel Visibility

Parameter

Description

Show as channel split

Activates the split view to display all channels in individual image containers. The last one shows the combined image with all channels. The currently selected image is highlighted with a blue frame, and in this view panning and zooming is synchronized. Note that this view is limited to 15 channels and it is not possible to add objects.

Single channel mode

Activating this mode displays only one channel of the image. You can switch between the different channels by clicking on the respective channel. in this mode, all Channel Settings apply only to this single channel.

Channel name and color

Displays all channels of the image. Clicking the channel name opens a color palette. The selected color is automatically displayed in the image area.

Channel Settings

Parameter

Description

Channel selection

Selects the channel for which you want to adjust the settings. You can either select one individual channel, or All Channels.

Min max

Adjusts the display characteristic curve in a way that the darkest pixel is black, and the brightest pixel is white in the display.

Best fit

Adjusts the display characteristic curve in a way that 0.1% of the darkest pixels contained in the image are black and 0.1% of the brightest pixels are white in the display.

Histogram

The histogram shows the brightness distribution of the pixels that are present from all channels simultaneously. The y-axis represents the relative frequency, and the x-axis indicates the brightness. A curve showing the corresponding distribution, the display characteristic curve, is displayed for each channel. If you open the histogram while in Single Channel Mode, the histogram only displays the information for the selected channel.

Histogram slider

Displays and sets the black and white value with the slider or input fields. The histogram graph is updated accordingly.

Black

The left slider handle or input field sets the gray value for which all pixels are shown as black with.

White

The right slider handle or input field sets the gray value for which all pixels are shown as white.

Bit depth

Sets the bit depth.

Auto

Sets the bit depth to the automatic default value.

Objects Menu

Object Tools

Offers tools to draw objects into the image. The tools also allow freeform drawing on the image, and the possibility to modify (parts of) some freely drawn object.

Parameter

Description

Select and Pan

Enables you to pan and select objects in the image.

Rectangle

Enables you to draw a rectangle into the image.

Ellipse

Enables you to draw an ellipse into the image.

Polygon

Enables you to draw a polygon into the image.

Measure

Enables you to draw a measurement line into the image.

Brush

Allows freeform drawing in the image.

Eraser

Allows you to remove some parts of your freeform drawing.

Discard

Only available if you have drawn an object.
Cancels the operation and removes the object from the image.

Save

Only available if you have drawn an object.
Saves the drawn object and adds it to the objects list below.

Autofill holes

Activated: Atomically fills the holes in freeform drawing.

Objects

Parameter

Description

Export CSV

Exports a list of all objects, the features, and their values as a .csv file.

+ Add tag

Adds a new tag to the Object List.

Features

Toggles the visibility of the features of the individual objects.

Object List

Displays a list with tags and objects. A tag is the highest element in the list hierarchy under which individual objects are grouped. The currently displayed objects in the list are the ones of the selected tag. All objects that are drawn into the image are always added to the currently selected tag. Double clicking the name of a tag or object enables you to rename it (the Default tag cannot be renamed, however). The individual objects have the same color as the tag, in the list as well as the image viewer. A click into the color field of a tag opens a window to select and change the color.

Four UI icons: eye, trash can, gear, pencil in a row

Toggles the view of objects of a specific tag. The button on top of the list toggles the visibility of all objects.

Toggle view of objects icon

Deletes the respective object or tag. If you delete an entire tag, all the individual objects of that tag are also deleted.

Delete object or tag icon

Focuses the respective object in the image viewer.

Focus object in viewer icon

Enables you to edit the shape of the respective object.

plane-wise loading

Only available for images with multiple planes.
Activated: Loads only the objects of the currently displayed plane.

Screenshot Options

Parameter

Description

Burn-in objects

Toggles if the objects drawn into the image are visible in the screenshot or not.

Burn-in scalebar

Toggles if a scalebar should be visible in the screenshot or not.

Crop image

Toggles if you want to crop the image to a subsection.

Download as jpg

Creates a screenshot of the current view port and downloads it as a jpeg file.

Copy to clipboard

Creates a screenshot of the current view port and copies it to the clipboard.

Image Viewer Settings

Parameter

Description

Background color

Selects the background color of the viewer.

Objects

Pixel based calculation

Activated: The objects measurements are done pixel based.

Show features of selected object only

Activated: Displays only the measurement features for the currently selected object in the viewer.

Available features

Here you can activate which measurement features are available and displayed for the objects in the viewer.

Impressum
Carl-Zeiss-Strasse 22
73447 Oberkochen
Germany
Legal