This article explains how to use the Compartments operation with imported Atlas objects to get segmentation results per atlas regions.
This article explains how to use the Compartments operation with imported Atlas objects to get segmentation results per atlas regions.
Anatomical atlases are valuable tools in contextualizing segmentation results by allowing users to not only get object counts and morphologies, but also knowing how these change in various regions of an organism or organ. This article does not show how to import and register atlas objects to a sample dataset but only covers how to use pipelines that take imported atlas objects together with image segmentation to contextualise the information.