Release Notes

New & Noteworthy

Accurately detecting cells and nuclei of varying sizes with the new Cellpose-SAM model.

new: Convert Traces to Segments operation.
new: Cellpose-SAM (CPSAM) model is available in the Cellpose-based Segmenter operation.
improved: Segment Morphology operation has additional parameters for some methods.
improved: DL reconstruction speed up by better utilization of GPU resources.
improved: error handling for the Export Surfaces operation.
fixed: a problem with large planes in CZI data if used with arivis Cloud models in DL Segmenter.

improved: import tiled LaVision FastTile Blaze data.
improved: normalization of the color range for CZI float datasets.
improved: support added for more compression types of HDF5 blocks (e.g. used by some IMS datasets).
fixed: potential wrong colors were imported from some Aperio-SVS data.
fixed: wrong pixel size imported from some Aperio-SVS data.
fixed: import of different image types as channels from Yokogawa.
fixed: import of BigDataViewer with non-consecutive setups.

added host config to database config which resolves file lock during workflow execution.
added RGB48/BGR48 support.
fixed access violation return code.
fixed dependency handling across all repos.
added indexes to models for better performance for viewing workflow results.
added configurable timeout settings for S3 watcher for better handling of large downloads from S3 bucket.