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Creating random sub-population of objects How to run the Random-subsampling operator in arivis Pro: In order to run the Random-subsampling operator in arivis Pro, the objects of interest should first be created and imported into the pipeline.

Creating Maximum Intensity Projections in arivis Pro This guide describes how to create maximum intensity projections, and how these can be used for further downstream processing.

Creating movies This article explains how to export movies from images in arivis Pro. See also Image analysis in arivis Pro Creating random sub-population of objects Performing SIS file optimization Measuring the ratio of objects inside other objects?

Calibrating datasets How to modify spatial and temporal calibrations in SIS files.

Configuring the result storage operator This guide describes how the result storage can be configured and the implications for the storage of images and objects in an analysis pipeline.

Exporting CSV files out of arivis Pro This guide explains how to switch between CSV and XLSX export for spreadsheet-style content export. See also Creating random sub-population of objects Image analysis in arivis Pro Performing SIS file optimization

Image analysis in arivis Pro Very short, basic overview of how to create and run pipelines in ZEISS arivis Pro.

Performing compartmentalization analysis This guide explains how to perform a Compartmentalization analysis. It guides you how to set up a study focused on the interactions and of the relationships between compartments of the structure under evaluation.

Quantifying contacts over time Measuring how often and how long some objects come into contact with each other can be a useful tool in biological relationship analysis. This guide explains how grouping combined with tracking can provide this information.

This article explains how it can be used. See also Importing and moving objects in a 3D volume Creating random sub-population of objects Image analysis in arivis Pro Performing SIS file optimization

Coloring volumes by depth in 3D view Use 4D Opacity Settings mapping to apply a color scale based on an axis rather than intensity See also How does arivis render datasets that are larger than the video memory in 3D?

Running arivis Pro on Amazon AWS The purpose of this application note is to provide information on how to run arivis Vision4D on an Amazon AWS EC2 Virtual Machine.

Performing SIS file optimization This guide explains how to perform the SIS file structure optimization (Defragmentation). All the redundancies and the unused spaces are removed and the SIS file compacted and packed.

Image Registration for Multiplexing Experiments in arivis Pro How to: Align multiple 3D images based on the nuclei staining This guides goal is to guide the user in the correct installation of the Anaconda3 Python package and the image registration workflow

Setting opacity in 3D renderings This guide explains how to perform an optimal opacity setting according to the active rendering modality.