ZEISS Microscopy Knowledge Base
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Data Results
AppliedParameter -Data ResultsThis table informs you about the acquisition parameters of microscope and camera and additional parameters to reproduce the analysis result. Segmentation
Segmentation Learn more about segmentation. Segmentation is an image processing method that identifies and separates different regions of interest.SegmentationAnalysis
When selecting an image or a pipeline file, the Information panel on the right displays details about analysis runs for the respective file as well as more details about the pipeline.AnalysisAnalysis
When selecting an image or a pipeline file, the Information panel on the right displays details about analysis runs for the respective file as well as more details about the pipeline.AnalysisDownloading your (semantic) model
Downloading your (semantic) model If you've trained a semantic segmentation model, you'll need to download it locally to your computer to use it in the software ecosystem, including ZEN and ZEN core.Downloading your (semantic) modelCreating Default Experiments as Templates Automatically
This cannot be modified but used as a starting point for your acquisition. If you want to generate an experiment template, the following steps are necessary. Create an experiment. In the menu bar, click on Help > About ZEN... The About ZEN dialog appears.Creating Default Experiments as Templates AutomaticallyPreliminary Remarks
Preliminary Remarks arivis Pro runs multiple applications (image registration) using external and independent Python libraries and tools produced by third parties.Preliminary RemarksUser Menu
User Menu Parameter Description About/Publisher Opens a window with publisher information about arivis Hub DMS and the Software License Agreement.User MenuUser Menu
User Menu Parameter Description About/Publisher Opens a window with publisher information about arivis Hub DMS and the Software License Agreement.User MenuAnalysis Runs View
The second menu in the top right enables you to select which list columns are displayed. 3 Information Panel Here you can show or hide the Information panel which displays information about the selected run, see Information Panel .Analysis Runs ViewAnalysis Runs View
The second menu in the top right enables you to select which list columns are displayed. 3 Information Panel Here you can show or hide the Information panel which displays information about the selected run, see Information Panel .Analysis Runs ViewUsing an existing objects in the pipeline
Using an existing objects in the pipeline First, note that while we are talking about manually drawn regions, this process also applies to any objects that have been previously stored in the documents.Using an existing objects in the pipelineLearn more
Learn more Don't forget to check out our how-to tutorial videos to see a hands-on example of how models trained with arivis AI toolkit can be used across the ecosystem. Tutorial: How to use your models in ZEN Have questions? We're here to help.Learn moreAdjusting Z-Values
Learn about how to adjust and verify the Z-values of positions in the chapter Adjusting Z-Values of Positions . Learn about how to adjust and verify the Z-values of tile regions in the chapter Adjusting Z-Values of Tile Regions .Adjusting Z-ValuesPanorama Acquisition Options Tool
The default state of the checkboxes is set to "undefined" (checkboxes are marked with a rectangle) which means the software tries to use an determined value for the current camera automatically.Panorama Acquisition Options ToolConclusions
We use the Analysis Panel to create Pipelines. Those pipelines are built from individual operations that work with each other to extract the information we need.ConclusionsUser Management
User Management The user and identity management of arivis Hub DMS is provided via the open-source software product Keycloak.User ManagementUser Management
User Management The user and identity management of arivis Hub DMS is provided via the open-source software product Keycloak.User ManagementDiffusion View
For information about calculations, see Calculation of Concentration and Diffusion Coefficient.Diffusion ViewAdjusting Server Settings
Adjusting Server Settings You have opened and are logged in to the management user interface, see Opening the Management Interface . Open the Settings page with the menu on the left side. The view with all settings opens.Adjusting Server Settings