ZEISS Microscopy Knowledge Base
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ZEISS Microscopy Knowledge Base

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  • Data Results

    AppliedParameter - This table informs you about the acquisition parameters of microscope and camera and additional parameters to reproduce the analysis result.
    Data Results
  • Segmentation

    Segmentation Learn more about segmentation. Segmentation is an image processing method that identifies and separates different regions of interest.
    Segmentation
  • Analysis

    When selecting an image or a pipeline file, the Information panel on the right displays details about analysis runs for the respective file as well as more details about the pipeline.
    Analysis
  • Analysis

    When selecting an image or a pipeline file, the Information panel on the right displays details about analysis runs for the respective file as well as more details about the pipeline.
    Analysis
  • Downloading your (semantic) model

    Downloading your (semantic) model If you've trained a semantic segmentation model, you'll need to download it locally to your computer to use it in the software ecosystem, including ZEN and ZEN core.
    Downloading your (semantic) model
  • Creating Default Experiments as Templates Automatically

    This cannot be modified but used as a starting point for your acquisition. If you want to generate an experiment template, the following steps are necessary. Create an experiment. In the menu bar, click on Help > About ZEN... The About ZEN dialog appears.
    Creating Default Experiments as Templates Automatically
  • Preliminary Remarks

    Preliminary Remarks arivis Pro runs multiple applications (image registration) using external and independent Python libraries and tools produced by third parties.
    Preliminary Remarks
  • User Menu

    User Menu Parameter Description About/Publisher Opens a window with publisher information about arivis Hub DMS and the Software License Agreement.
    User Menu
  • User Menu

    User Menu Parameter Description About/Publisher Opens a window with publisher information about arivis Hub DMS and the Software License Agreement.
    User Menu
  • Analysis Runs View

    The second menu in the top right enables you to select which list columns are displayed. 3 Information Panel Here you can show or hide the Information panel which displays information about the selected run, see Information Panel .
    Analysis Runs View
  • Analysis Runs View

    The second menu in the top right enables you to select which list columns are displayed. 3 Information Panel Here you can show or hide the Information panel which displays information about the selected run, see Information Panel .
    Analysis Runs View
  • Using an existing objects in the pipeline

    Using an existing objects in the pipeline First, note that while we are talking about manually drawn regions, this process also applies to any objects that have been previously stored in the documents.
    Using an existing objects in the pipeline
  • Learn more

    Learn more Don't forget to check out our how-to tutorial videos to see a hands-on example of how models trained with arivis AI toolkit can be used across the ecosystem. Tutorial: How to use your models in ZEN Have questions? We're here to help.
    Learn more
  • Adjusting Z-Values

    Learn about how to adjust and verify the Z-values of positions in the chapter Adjusting Z-Values of Positions . Learn about how to adjust and verify the Z-values of tile regions in the chapter Adjusting Z-Values of Tile Regions .
    Adjusting Z-Values
  • Panorama Acquisition Options Tool

    The default state of the checkboxes is set to "undefined" (checkboxes are marked with a rectangle) which means the software tries to use an determined value for the current camera automatically.
    Panorama Acquisition Options Tool
  • Conclusions

    We use the Analysis Panel to create Pipelines. Those pipelines are built from individual operations that work with each other to extract the information we need.
    Conclusions
  • User Management

    User Management The user and identity management of arivis Hub DMS is provided via the open-source software product Keycloak.
    User Management
  • User Management

    User Management The user and identity management of arivis Hub DMS is provided via the open-source software product Keycloak.
    User Management
  • Diffusion View

    For information about calculations, see Calculation of Concentration and Diffusion Coefficient.
    Diffusion View
  • Adjusting Server Settings

    Adjusting Server Settings You have opened and are logged in to the management user interface, see Opening the Management Interface . Open the Settings page with the menu on the left side. The view with all settings opens.
    Adjusting Server Settings
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